Resources

Camlhmp software for bactopia tools integration

• https://github.com/erinyoung/tulatyper

R package, TTAT, containing scripts for analysis of large-scale datasets

Scripts and code for the evaluation of likelihood-based framework for applying Tip-Trait Association Tests through simulated real-time surveillance at national, state, and county levels.

• https://github.com/leke-lyu/jointEstimation

• https://github.com/Gabriella-Veytsel/georgia

Scripts and code for Statistical Methods for real-time molecular epidemiology that accounts for human mobility and demographic features

• https://github.com/daileyco